PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G197100.1
Common NameB456_005G197100, LOC105794822
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 234aa    MW: 26196.5 Da    PI: 6.2444
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G197100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-204998255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a++k++g
  Gorai.005G197100.1 49 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAALAYDRAALKFKG 98
                        7********.**********94....45************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-3348107IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-2349107IPR016177DNA-binding domain
PfamPF008474.9E-144998IPR001471AP2/ERF domain
SMARTSM003802.6E-3949112IPR001471AP2/ERF domain
PROSITE profilePS5103224.86949106IPR001471AP2/ERF domain
CDDcd000183.01E-3549107No hitNo description
PRINTSPR003676.3E-125061IPR001471AP2/ERF domain
PRINTSPR003676.3E-127288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MTAMVTALTQ VMGSDEQLSF QQSPTPSSVQ SEVKNEPAVQ DQENTRKRHY RGVRQRPWGK  60
WAAEIRDPKK AARVWLGTFD TAEDAALAYD RAALKFKGTK AKLNFPERVQ GNREVSYLTG  120
PGDSSTVHSA QNPTPVVAPS SWSQDSYPHL FQYAQLLSSS NDADISYYTS NLFNFNQEEP  180
FSPQFSSMSA SSTFSSQYYH QDLTRFSTNY DSSSGPDYPH HYGKDFDPST RSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2848109163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5819396e-59JX581939.1 Gossypium hirsutum clone NBRI_GE14683 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479625.11e-174PREDICTED: ethylene-responsive transcription factor ERF113-like isoform X1
SwissprotQ9LYU33e-55EF113_ARATH; Ethylene-responsive transcription factor ERF113
TrEMBLA0A0D2RPV81e-174A0A0D2RPV8_G
STRINGPOPTR_0001s12990.11e-66(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-45related to AP2 6l
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]